Package: RPesto 0.1.6

RPesto: Phylogenetic Estimation of Shifts in the Tempo of Origination

Implements diversification analyses using the phylogenetic birth-death-shift model. It leverages belief propagation techniques to calculate branch-specific diversification rates, see Kopperud & Hoehna (2025) <doi:10.1093/sysbio/syaf041>.

Authors:Bjørn Tore Kopperud [aut, cre], Sebastian Höhna [aut]

RPesto_0.1.6.tar.gz
RPesto_0.1.6.zip(r-4.7-x86_64)RPesto_0.1.6.zip(r-4.7-arm64)RPesto_0.1.6.zip(r-4.6-x86_64)RPesto_0.1.6.zip(r-4.6-arm64)RPesto_0.1.6.zip(r-4.5-x86_64)
RPesto_0.1.6.tgz(r-4.6-x86_64)RPesto_0.1.6.tgz(r-4.6-arm64)RPesto_0.1.6.tgz(r-4.5-x86_64)RPesto_0.1.6.tgz(r-4.5-arm64)
RPesto_0.1.6.tar.gz(r-4.7-arm64)RPesto_0.1.6.tar.gz(r-4.7-x86_64)RPesto_0.1.6.tar.gz(r-4.6-arm64)RPesto_0.1.6.tar.gz(r-4.6-x86_64)
RPesto_0.1.5.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RPesto/json (API)

# Install 'RPesto' in R:
install.packages('RPesto', repos = c('https://kopperud.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kopperud/rpesto/issues

Datasets:

On CRAN:

Conda:

rustcargo

3.90 score 2 stars 1 scripts 224 downloads 4 exports 32 dependencies

Last updated from:6fbbc58fd7. Checks:14 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK141
linux-devel-x86_64OK197
source / vignettesOK253
linux-release-arm64OK132
linux-release-x86_64OK168
macos-release-arm64OK142
macos-release-x86_64OK288
macos-oldrel-arm64OK138
macos-oldrel-x86_64OK245
windows-devel-arm64OK546
windows-devel-x86_64OK228
windows-release-arm64OK437
windows-release-x86_64OK193
windows-oldrel-x86_64OK183
wasm-releaseFAIL150

Exports:fit_bdsfit_cbdPhylogenytreedata

Dependencies:apeclicpp11digestdplyrfsgenericsgluejsonlitelatticelazyevallifecyclemagrittrnlmepillarpkgconfigpurrrR6rappdirsRcpprlangstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrswithryulab.utils