{
  "_id": "6ad26d263c1b78c68c07b564",
  "Package": "RPesto",
  "Title": "Phylogenetic Estimation of Shifts in the Tempo of Origination",
  "Version": "0.1.6",
  "Authors@R": "c(person(\"Bj\\u00F8rn Tore\", \"Kopperud\", role = c(\"aut\", \"cre\"), email = \"kopperud@protonmail.com\"),\nperson(\"Sebastian\", \"H\\u00F6hna\", role = c(\"aut\")))",
  "Description": "Implements diversification analyses using the phylogenetic\nbirth-death-shift model. It leverages belief propagation\ntechniques to calculate branch-specific diversification rates,\nsee Kopperud & Hoehna (2025) <doi:10.1093/sysbio/syaf041>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Config/rextendr/version": "0.4.2",
  "SystemRequirements": "Cargo (Rust's package manager), rustc",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libclang-dev",
  "Repository": "https://kopperud.r-universe.dev",
  "Date/Publication": "2026-10-16 13:33:00 UTC",
  "RemoteUrl": "https://github.com/kopperud/rpesto",
  "RemoteRef": "HEAD",
  "RemoteSha": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-16 18:19:48 UTC",
    "User": "root"
  },
  "Author": "Bjørn Tore Kopperud [aut, cre],\nSebastian Höhna [aut]",
  "Maintainer": "Bjørn Tore Kopperud <kopperud@protonmail.com>",
  "_user": "kopperud",
  "_type": "src",
  "_file": "RPesto_0.1.6.tar.gz",
  "_fileid": "https://r2.ropensci.org/531420a539eac3b3362cb713516237ec4bd7f394ebacf6c3e7037c1d2664cf0b",
  "_filesize": 143375,
  "_sha256": "531420a539eac3b3362cb713516237ec4bd7f394ebacf6c3e7037c1d2664cf0b",
  "_expires": "2027-01-24T18:29:56.000Z",
  "_created": "2026-10-16T18:19:48.000Z",
  "_published": "2026-10-16T18:29:58.201Z",
  "_buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117127149871,
      "time": 141,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12067335945"
    },
    {
      "job": 117127149815,
      "time": 197,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12066227494"
    },
    {
      "job": 117127149858,
      "time": 132,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12066751189"
    },
    {
      "job": 117127150004,
      "time": 168,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12067510828"
    },
    {
      "job": 117127149968,
      "time": 138,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12066501970"
    },
    {
      "job": 117127149855,
      "time": 245,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12067282167"
    },
    {
      "job": 117127150036,
      "time": 142,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12066452375"
    },
    {
      "job": 117127149945,
      "time": 288,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12067441335"
    },
    {
      "job": 117125230843,
      "time": 253,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12067520349"
    },
    {
      "job": 117127150019,
      "time": 150,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 117127150102,
      "time": 546,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12067056870"
    },
    {
      "job": 117127150387,
      "time": 228,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12066497033"
    },
    {
      "job": 117127150190,
      "time": 183,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12066367418"
    },
    {
      "job": 117127150345,
      "time": 437,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12067081858"
    },
    {
      "job": 117127149982,
      "time": 193,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12067181110"
    }
  ],
  "_upstream": "https://github.com/kopperud/rpesto",
  "_commit": {
    "id": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
    "author": "kopperud <kopperud@protonmail.com>",
    "committer": "kopperud <kopperud@protonmail.com>",
    "message": "doc string for Phylogeny\n",
    "time": 1792157580
  },
  "_maintainer": {
    "name": "Bjørn Tore Kopperud",
    "email": "kopperud@protonmail.com",
    "login": "kopperud",
    "description": "",
    "uuid": 18629226
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "tidytree",
      "role": "Imports"
    },
    {
      "package": "treeio",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    }
  ],
  "_owner": "kopperud",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-46",
      "n": 27
    },
    {
      "week": "2025-47",
      "n": 9
    },
    {
      "week": "2026-04",
      "n": 3
    },
    {
      "week": "2026-13",
      "n": 2
    },
    {
      "week": "2026-24",
      "n": 1
    },
    {
      "week": "2026-32",
      "n": 4
    },
    {
      "week": "2026-39",
      "n": 2
    },
    {
      "week": "2026-42",
      "n": 5
    }
  ],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "kopperud",
      "count": 140,
      "uuid": 18629226
    }
  ],
  "_userbio": {
    "uuid": 18629226,
    "type": "user",
    "name": "Bjørn Tore Kopperud",
    "followers": 22
  },
  "_downloads": {
    "count": 224,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/RPesto"
  },
  "_devurl": "https://github.com/kopperud/rpesto",
  "_searchresults": 1,
  "_cargo": true,
  "_topics": [
    "rust",
    "cargo"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/RPesto.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/kopperud/rpesto",
  "_realowner": "kopperud",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.4",
      "date": "2025-11-26"
    },
    {
      "version": "0.1.5",
      "date": "2026-08-04"
    }
  ],
  "_exports": [
    "fit_bds",
    "fit_cbd",
    "Phylogeny",
    "treedata"
  ],
  "_datasets": [
    {
      "name": "primates",
      "title": "Primates phylogenetic tree",
      "object": "primates",
      "file": "primates.rda",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "RPesto-package",
      "title": "RPesto: Phylogenetic Estimation of Shifts in the Tempo of Origination (in R)",
      "topics": [
        "RPesto-package",
        "RPesto"
      ]
    },
    {
      "page": "fit_bds",
      "title": "fits the bds model",
      "topics": [
        "fit_bds"
      ]
    },
    {
      "page": "fit_cbd",
      "title": "fits the constant-rate birth-death model",
      "topics": [
        "fit_cbd"
      ]
    },
    {
      "page": "Phylogeny",
      "title": "Phylogeny",
      "topics": [
        "$.Phylogeny",
        "Phylogeny"
      ]
    },
    {
      "page": "primates",
      "title": "Primates phylogenetic tree",
      "topics": [
        "primates"
      ]
    }
  ],
  "_readme": "https://github.com/kopperud/rpesto/raw/HEAD/readme.md",
  "_rundeps": [
    "ape",
    "cli",
    "cpp11",
    "digest",
    "dplyr",
    "fs",
    "generics",
    "glue",
    "jsonlite",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "nlme",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidytree",
    "treeio",
    "utf8",
    "vctrs",
    "withr",
    "yulab.utils"
  ],
  "_score": 3.9030899869919438,
  "_indexed": true,
  "_nocasepkg": "rpesto",
  "_universes": [
    "kopperud"
  ],
  "_previous": "0.1.5.9000",
  "_binaries": [
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.5.9000",
      "date": "2026-10-09T12:13:07.000Z",
      "arch": "emscripten",
      "commit": "e438fb03ca694253c2e3bc387a5bfab4cc736d93",
      "fileid": "https://r2.ropensci.org/31c688df0c0028bf4ccf9159d6c96c24b6350617eab2a1e9305fcc2a5e10ab72",
      "status": "success",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/37928047723"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-16T18:22:16.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/5edbaf032b271dfb615baa7481077b0352c3c1c63b5956263ed21c0f37ffc82f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-16T18:22:54.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/9b793c1bfa2b1ba52ad7cdc006af38eee85698a4ec2eba83ae6ac0e2c3418071",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-16T18:22:11.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/742857a2f7cec181acef0cb82a0de017a972ee581899689d2fa9607a8cce12d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.6",
      "date": "2026-10-16T18:22:30.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/183f52aec369ac19892fae36263f419586ba0087267736a37adec3c82e79e08a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.6",
      "date": "2026-10-16T18:23:13.000Z",
      "arch": "aarch64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/a8eae190a5dc4aec680fe80fb7f8e9dfcc75f26dd1a1a7f27318f14852402c47",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.6",
      "date": "2026-10-16T18:28:03.000Z",
      "arch": "x86_64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/7f0255b1d0e58883ff60ff3a63767b5caf32348c60fb03eaea01142eb6d73e1d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.6",
      "date": "2026-10-16T18:23:45.000Z",
      "arch": "aarch64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/3cb4b0a9889f96acca1ef4fead09b4cfea0945d53831810cbcfe42353385eef5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.6",
      "date": "2026-10-16T18:23:52.000Z",
      "arch": "x86_64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/47aa6cf9f0ade048c1908d50643890b35e40dd36b43efbd94c2d31a65def03a6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-16T18:27:26.000Z",
      "arch": "aarch64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/e1098b267deb8e8bc103d4adfdd9e54b141dd365aeab01bd7924cc7a633c9790",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-16T18:21:35.000Z",
      "arch": "x86_64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/3f9ed4eccd2bdb56269333dbed92c4b8e23233fdc1e9f741fac742695f571bda",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-16T18:21:25.000Z",
      "arch": "x86_64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/586c1133303521e8384d05e1eb92ce4183d5ca29b7c60c89e9d09ddb46ef93fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-16T18:25:45.000Z",
      "arch": "aarch64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/6e15e9561c42aa48f6d604b34e62eaffa95ce448b98848c4e29c67a1b0b19295",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.6",
      "date": "2026-10-16T18:21:36.000Z",
      "arch": "x86_64",
      "commit": "6fbbc58fd76665cf57aa8aa2bd6fa4a066f647f5",
      "fileid": "https://r2.ropensci.org/b2981b76b37ff6b6448a1d9167f140cb966507fbe0b12ea17e419cacefe90fcc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/38945978579"
    }
  ]
}