{
  "_id": "6a29b91b7b7a29ca600303e0",
  "Package": "RPesto",
  "Title": "Phylogenetic Estimation of Shifts in the Tempo of Origination",
  "Version": "0.1.4.9000",
  "Authors@R": "c(person(\"Bj\\u00F8rn Tore\", \"Kopperud\", role = c(\"aut\", \"cre\"), email = \"kopperud@protonmail.com\"),\nperson(\"Sebastian\", \"H\\u00F6hna\", role = c(\"aut\")))",
  "Description": "Implements diversification analyses using the phylogenetic\nbirth-death-shift model. It leverages belief propagation\ntechniques to calculate branch-specific diversification rates,\nsee Kopperud & Hoehna (2025) <doi:10.1093/sysbio/syaf041>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/rextendr/version": "0.4.2",
  "SystemRequirements": "Cargo (Rust's package manager), rustc",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libclang-dev",
  "Repository": "https://kopperud.r-universe.dev",
  "Date/Publication": "2026-06-10 16:33:26 UTC",
  "RemoteUrl": "https://github.com/kopperud/rpesto",
  "RemoteRef": "HEAD",
  "RemoteSha": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-10 19:15:30 UTC",
    "User": "root"
  },
  "Author": "Bjørn Tore Kopperud [aut, cre],\nSebastian Höhna [aut]",
  "Maintainer": "Bjørn Tore Kopperud <kopperud@protonmail.com>",
  "MD5sum": "b909aee57615afb6eb96fbf1dff3802d",
  "_user": "kopperud",
  "_type": "src",
  "_file": "RPesto_0.1.4.9000.tar.gz",
  "_fileid": "a0b48c963c2b7501611d8e62b82078e8b959474413cd8ea6d417893c4934e5a7",
  "_filesize": 143671,
  "_sha256": "a0b48c963c2b7501611d8e62b82078e8b959474413cd8ea6d417893c4934e5a7",
  "_created": "2026-06-10T19:15:30.000Z",
  "_published": "2026-06-10T19:20:59.256Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80643216230,
      "time": 156,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7545765215"
    },
    {
      "job": 80643216252,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7545767120"
    },
    {
      "job": 80643216225,
      "time": 155,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7545768201"
    },
    {
      "job": 80643216181,
      "time": 158,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7545768274"
    },
    {
      "job": 80643216257,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7545807824"
    },
    {
      "job": 80643216198,
      "time": 244,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7545808063"
    },
    {
      "job": 80643216234,
      "time": 134,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7545796368"
    },
    {
      "job": 80643216197,
      "time": 254,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7545808764"
    },
    {
      "job": 80642586102,
      "time": 185,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7545709214"
    },
    {
      "job": 80643216128,
      "time": 149,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7545763797"
    },
    {
      "job": 80643216142,
      "time": 274,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7545813209"
    },
    {
      "job": 80643216318,
      "time": 202,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7545785439"
    },
    {
      "job": 80643216303,
      "time": 269,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7545810879"
    }
  ],
  "_buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/kopperud/rpesto",
  "_commit": {
    "id": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
    "author": "kopperud <kopperud@protonmail.com>",
    "committer": "kopperud <kopperud@protonmail.com>",
    "message": "split sd into two parameters\n",
    "time": 1781109206
  },
  "_maintainer": {
    "name": "Bjørn Tore Kopperud",
    "email": "kopperud@protonmail.com",
    "login": "kopperud",
    "description": "",
    "uuid": 18629226
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "tidytree",
      "role": "Imports"
    },
    {
      "package": "treeio",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    }
  ],
  "_owner": "kopperud",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-26",
      "n": 33
    },
    {
      "week": "2025-27",
      "n": 51
    },
    {
      "week": "2025-28",
      "n": 3
    },
    {
      "week": "2025-29",
      "n": 4
    },
    {
      "week": "2025-31",
      "n": 1
    },
    {
      "week": "2025-32",
      "n": 1
    },
    {
      "week": "2025-35",
      "n": 1
    },
    {
      "week": "2025-41",
      "n": 1
    },
    {
      "week": "2025-46",
      "n": 27
    },
    {
      "week": "2025-47",
      "n": 9
    },
    {
      "week": "2026-04",
      "n": 3
    },
    {
      "week": "2026-13",
      "n": 2
    },
    {
      "week": "2026-24",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "kopperud",
      "count": 129,
      "uuid": 18629226
    }
  ],
  "_userbio": {
    "uuid": 18629226,
    "type": "user",
    "name": "Bjørn Tore Kopperud"
  },
  "_downloads": {
    "count": 190,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/RPesto"
  },
  "_devurl": "https://github.com/kopperud/rpesto",
  "_searchresults": 1,
  "_cargo": true,
  "_topics": [
    "rust",
    "cargo"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/RPesto.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/kopperud/rpesto",
  "_realowner": "kopperud",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.4",
      "date": "2025-11-26"
    }
  ],
  "_exports": [
    "fit_bds",
    "fit_cbd",
    "Phylogeny",
    "treedata"
  ],
  "_datasets": [
    {
      "name": "primates",
      "title": "Primates phylogenetic tree",
      "object": "primates",
      "file": "primates.rda",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "RPesto-package",
      "title": "RPesto: Phylogenetic Estimation of Shifts in the Tempo of Origination (in R)",
      "topics": [
        "RPesto-package",
        "RPesto"
      ]
    },
    {
      "page": "fit_bds",
      "title": "fits the bds model",
      "topics": [
        "fit_bds"
      ]
    },
    {
      "page": "fit_cbd",
      "title": "fits the constant-rate birth-death model",
      "topics": [
        "fit_cbd"
      ]
    },
    {
      "page": "Phylogeny",
      "title": "Phylogeny constructor",
      "topics": [
        "$.Phylogeny",
        "Phylogeny"
      ]
    },
    {
      "page": "primates",
      "title": "Primates phylogenetic tree",
      "topics": [
        "primates"
      ]
    }
  ],
  "_readme": "https://github.com/kopperud/rpesto/raw/HEAD/readme.md",
  "_rundeps": [
    "ape",
    "cli",
    "cpp11",
    "digest",
    "dplyr",
    "fs",
    "generics",
    "glue",
    "jsonlite",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "nlme",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidytree",
    "treeio",
    "utf8",
    "vctrs",
    "withr",
    "yulab.utils"
  ],
  "_score": 3.8129133566428557,
  "_indexed": true,
  "_nocasepkg": "rpesto",
  "_universes": [
    "kopperud"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:17:58.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "19a666b1471a84b5bf435bd2ee00b2c4bbf4b2a67f4725a77e7ce084fe183dce",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:17:56.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "f7c39769c9792dc8c1169ea8e51e2af60b5efbbbaaaa76271a404aa4abc96652",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:18:06.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "fa19efbf0c973bec30684a8f1456f70c27bce009b6ef7ff86898ad6a359aaeba",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:17:57.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "527efeadb03feccd3af8ce335b6b5ba8cd6a122ecdb4b8f5108371b00c9e64dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:19:34.000Z",
      "arch": "aarch64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "af2e78cc310ad8093cd9603186593d9a5582d7bad4f2eb0f8bacb9e7aa36297a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:19:00.000Z",
      "arch": "x86_64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "ba1f332b801e331e4c43a87e23262a60efc8179b70952385c1b00010ce1627cc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:19:10.000Z",
      "arch": "aarch64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "10c3e36c47b7d59d6f9a5e70a0a32fc4726be0814962bf3e3ab09d2e5e6280b5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:18:55.000Z",
      "arch": "x86_64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "71e89f08337298119a0980a28ce6fee0fe57b033b2d9023f7434bdc0685f3461",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:18:03.000Z",
      "arch": "emscripten",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "794c72922c629d40bb7cf918dfd55ce372b0d4f9347fa49f064d1a0d2cf20aef",
      "status": "success",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:17:19.000Z",
      "arch": "x86_64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "3a4fbd67f53600b2c243d5e15231689b90b3116ac56b8f74e18d81b122c49755",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:17:19.000Z",
      "arch": "x86_64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "9038f3f3d2db5c01ba8fce5598be36168debb56734234389d1f4d54646c716d0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.4.9000",
      "date": "2026-06-10T19:17:33.000Z",
      "arch": "x86_64",
      "commit": "df74fbf1a63ce8e4f951da4566b4870e12f9f01b",
      "fileid": "47e172ccf50ba3dc7483e6d3a2314a33981115ed098d9721ea80ce276c0412c5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/kopperud/actions/runs/27299898297"
    }
  ]
}